Consortia for standards recommendations
Concepts, schemes and exchange standards, metastandards (* mapped with MOD-CO schema)
GSC MIxS: The GSC family of minimum information standards (checklists) – Minimum Information about any (x) Sequence; MIxS currently consists of three separate checklists; MIGS for genomes, MIMS for metagenomes, and MIMARKS for marker genes. The three checklists that are currently under MIxS share the same central set of core descriptors, but have checklist specific descriptors as well. Additionally, they enable a detailed description of environment through the use of 15 optional environmental packages.
GGBN Data Standard v. 1 and GGBN Data Standard * (LOD-compliant representation); with e. g. relation to DwC http://wiki.ggbn.org/ggbn/DwC; see also Global Genome Biodiversity Network (GGBN) Portal and GGBN Wiki
ISA Model and Serialization Specifications with ISA Abstract Model (three core entities to capture experimental metadata: investigation, study, assay) and ISA tools under https://isa-specs.readthedocs.io/en/latest/implementations.html and https://github.com/ISA-tools
RO- Crate Initiative: RO-Crate has been developed as a schema.org-based JSON lightweight approach to the next generation Research Object serialization.
AnIML Markup Language. The Analytical Information Markup Language (AnIML) is the emerging ASTM XML standard for analytical chemistry and biological data; see Core schema and paper https://www.laboratory-journal.com/category/tags/data-exchange and paper: https://journals.sagepub.com/doi/10.1016/j.jala.2004.10.003; BSSN software GmbH
Consortium for Standardization in Lab Automation (SiLA) develops and introduces new device and data interface standards with SiLA 2 Core and Mapping specification https://docs.google.com/document/d/1-shgqdYW4sgYIb5vWZ8xTwCUO_bqE13oBEX8rYY_SJA/edit , IPA Fraunhofer Stuttgart: Labor-IT and SiLA
Federal Geographic Data Committee Biological Data Working Group and U.S. Geological Survey Biological Resources Division [FGDC].1999. Content standard for digital geospatial metadata - biological data profile, FGDC-STD-001.1-1999. Federal Geographic Data Committee, Washington, D.C., USA., see https://www.fgdc.gov/metadata/csdgm-standard - CSDGM-Biological Data Profile (BDP)
GBIF Resources: This site contains technical GBIF resources like XML schemas, Darwin Core Archive/IPT extensions and vocabularies and is primarily intended for machine reading; see xml schema EML 2.1.1, GGBN extension of DwC etc.
GFBio Overview on "Concepts and Standards": Data exchange standards, protocols and formats relevant for the collection data domain
Knowledge Organisation Systems, Ontology Vocabularies
Biological Collections Ontology (BCO) based on Basic Formal Ontology and DwC terms
SPREC schema with draft International Standard, ISO/DIS 20387 for biobanking
DWB namespaces and ER diagrams
Databases for implementation of MOD-CO ontologies/ vocabularies and schemas
Links of Interest
EDAM Ontology: An ontology of biological and biomedical topics, created from merging the EDAM Topics sub-ontology with auxiliary topics that are out of scope of EDAM, used by bio.tools
ELN versus LIMS "Ein LIMS ist darauf ausgelegt, Daten hoch strukturiert abzulegen, ein ELN (electronic laboratory notebook) ist darauf ausgelegt, Daten unstrukturiert abzulegen." Protokolle in ELN, ELN in F&E Laboren...
BIOAWARE company: Life Sciences Data Management Software, Limsophy LIMS and RIMS, bei IPK Gatersleben
zu "Online Registries: The DNS and Beyond... Handle DOI" Dyson 2003
Berners-Lee, T. (2006/2009): Linked Data. https://www.w3.org/DesignIssues/LinkedData.html
PROV standards: https://www.w3.org/TR/2013/NOTE-prov-overview-20130430/ and https://www.w3.org/2011/prov/wiki/Main_Page (incl. mapping to Dublin Core)
Fairsharing.org - A curated, informative and educational resource on data and metadata standards, inter-related to databases and data policies, e.g., https://fairsharing.org/standards/?q=SDD : distinguish between Terminology Artifact; Model/Format and Reporting Guideline; 1118 standards, 262 of these models/formats, 160 of these life science, 11 biodiversity, 18 sequence
Sensordaten in der Cloud mit io-Key
Virtual informatics with laboratory informatics, bioinformatics, geoinformatics and biodiversity informatics
DONA Foundation. (2019). Digital Object Architecture. Available at: https://www.dona.net/digitalobjectarchitecture . with "digital object concept"
odMLtables: A User-Friendly Approach for Managing Metadata of Neurophysiological Experiments, see article
http://mod-co.net/8139d48b-f83f-49cc-81c6-b037f0bc8e6c ??? wie UUID as html page head element “title“